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Forum: Illumina/Solexa 03-18-2015, 01:12 PM
Replies: 16
Views: 3,466
Posted By gblanchard4
I haven't encountered that in any of the...

I haven't encountered that in any of the sequencing my lab has done. Have you tried any other clustering methods? What percentage are you clustering at? How many total OTUs did you find?
Forum: Illumina/Solexa 01-16-2015, 10:45 AM
Replies: 2
Views: 1,794
Posted By gblanchard4
You may get better help in the Qiime Forums...

You may get better help in the Qiime Forums (https://groups.google.com/forum/#!forum/qiime-forum.)

The sequencing vendor may have used UPARSE...
Forum: Illumina/Solexa 01-13-2015, 01:25 PM
Replies: 4
Views: 1,642
Posted By gblanchard4
We have a Synology nas DS3612...

We have a Synology nas DS3612 (https://www.synology.com/en-us/products/DS3612xs) in the informatics lab that we backup the runs to over NFS. It has a ton of features that could be overkill for your...
Forum: Illumina/Solexa 02-07-2014, 10:56 AM
Replies: 2
Views: 3,134
Posted By gblanchard4
Here is a python script that I wrote to...

Here is a python script that I wrote to dereplicate larger fastas github (https://gist.github.com/gblanchard4/8870470)
The only requirement is BioPython needs to be in your python path. You can use...
Forum: Illumina/Solexa 08-20-2013, 01:15 PM
Replies: 26
Views: 16,720
Posted By gblanchard4
Are you still getting the issues launching MCS?...

Are you still getting the issues launching MCS? Even after a restart I am getting similar problems and can not get any of the Illumina programs to launch. I guess I will be calling tech support...
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