Forum: Bioinformatics
09-20-2011, 08:31 AM
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Replies: 1
Views: 1,829
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Forum: De novo discovery
09-12-2011, 07:58 AM
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Replies: 8
Views: 5,183
Dear salmonella,
Sorry for this late...
Dear salmonella,
Sorry for this late answer...
I'm one of the authors of Mapsembler.
The output of mapsembler, while used using the graph output, can be viewed by any viewer able to deal with...
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Forum: De novo discovery
06-21-2011, 12:10 AM
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Replies: 8
Views: 5,183
Dear all,
I'd like to mention a tool called...
Dear all,
I'd like to mention a tool called mapsembler. It takes some sequence fragments and a set of (illumina) reads. It tries to reconstruct each sequence fragment using the reads (authorizing...
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Forum: De novo discovery
03-30-2011, 12:23 PM
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Replies: 5
Views: 4,862
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Forum: De novo discovery
02-07-2011, 01:28 AM
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Replies: 5
Views: 4,862
Dear Marius,
At INRIA, France we developped...
Dear Marius,
At INRIA, France we developped an algorithm, called kisSnp that compares two sets of raw reads. It detects from these sets SNP polymorphism.
We have a public validated Java...
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Forum: De novo discovery
09-29-2010, 08:07 AM
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Replies: 38
Views: 17,077
With the current version we detect only SNPs...
With the current version we detect only SNPs between individuals. One compares two set of reads, focusing on small substitutions that may be those SNPs.
We are currently working on a version...
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Forum: De novo discovery
09-29-2010, 12:38 AM
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Replies: 38
Views: 17,077
A piece of information,
We developed a...
A piece of information,
We developed a tool, called kisSnp that takes two sets of non assembled raw short reads and compare them for finding SNPs between these two sets.
It outputs the SNPs...
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