SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 6 of 6
Search took 0.00 seconds.
Search: Posts Made By: ybukhman
Forum: De novo discovery 02-10-2018, 08:48 AM
Replies: 3
Views: 5,825
Posted By ybukhman
Thanks for the tip, nucacidhunter!

Thanks for the tip, nucacidhunter!
Forum: De novo discovery 02-09-2018, 01:12 PM
Replies: 3
Views: 5,825
Posted By ybukhman
Question long-range technologies for genome scaffolding

Hi all,

I am working on a mammalian genome project. We have an assembly from PacBio reads with N50 = 6.2 Mb. We would like to generate some long-range data that could be used for scaffolding. I am...
Forum: Bioinformatics 07-17-2017, 01:45 PM
Replies: 34
Views: 18,549
Posted By ybukhman
Thanks a lot, Brian! I'll give it a try.

Thanks a lot, Brian! I'll give it a try.
Forum: Bioinformatics 07-15-2017, 08:15 AM
Replies: 34
Views: 18,549
Posted By ybukhman
RE: filtering soil metagenomics data

Thank you, fanli and Brian! I guess one possibility is not to filter initially, but then check the final assembly against the contaminant files just to find out if some of the species that I am...
Forum: Bioinformatics 07-14-2017, 03:19 PM
Replies: 34
Views: 18,549
Posted By ybukhman
Hi Brian, is it appropriate to use the...

Hi Brian,

is it appropriate to use the bacterial contaminant files, fusedEPmasked2.fa.gz
and/or fusedERPBBmasked2.fa.gz, to filter soil metagenomics reads?

Thank you for your very useful tools...
Forum: Introductions 07-14-2017, 03:13 PM
Replies: 0
Views: 901
Posted By ybukhman
Greetings from Madison

Greetings! My name is Yury Bukhman. I work at the Computational Biology Group at Great Lakes Bioenergy Research Center, University of Wisconsin - Madison. Working on a soil metagenomics project...
Showing results 1 to 6 of 6

 


All times are GMT -8. The time now is 05:31 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO