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Forum: Bioinformatics 03-25-2011, 07:52 AM
Replies: 6
Views: 4,376
Posted By query
I understand that this is non-trivial and choices...

I understand that this is non-trivial and choices have to be made. I was wondering if a trivial converter that mostly assumes single-base insertions and makes the most obvious choices for a...
Forum: Bioinformatics 03-24-2011, 10:03 AM
Replies: 6
Views: 4,376
Posted By query
BAM/SAM to a gapped multiple sequence alignment

Are there any tools out there that would convert a SAM/BAM file to a gapped multiple sequence alignment of the reads and the reference? I am looking for a text formatted output (like fasta) of this...
Forum: Bioinformatics 02-19-2009, 02:00 PM
Replies: 33
Views: 16,598
Posted By query
mapping 454 reads to a reference genome

What is the best tool available to map 454 reads to a reference genome? What is the method used by gs reference Mapper (analysis tool that comes with 454) and does it do a decent job of mapping and...
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