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Forum: Illumina/Solexa 07-25-2014, 05:34 AM
Replies: 0
Views: 1,081
Posted By muenalan
PE1 sequence absent in fastq ?

We have observed that in the miseq result fastq files (untrimmed, non-demultiplexed) that a specific adaptor (PE1) is not available in the output data. However, PE2 is always present.

Are there...
Forum: Bioinformatics 09-06-2012, 05:13 AM
Replies: 2
Views: 1,522
Posted By muenalan
[solved]

Yes,

Exactly the information I was looking for.

Thx,
M!
Forum: Bioinformatics 09-05-2012, 06:53 AM
Replies: 2
Views: 1,522
Posted By muenalan
samtools/bcftools: How to inspect SNPs not made it into vcf file

Hi,

Is there any parameter to "log" the snp-calling for individual SNP's which did not make it into the .vcf ? Or any other way to look how are the parameters for that SNP, if called ?

Info: We...
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