Forum: Bioinformatics
11-14-2011, 01:17 PM
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Replies: 4
Views: 4,269
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Forum: RNA Sequencing
10-25-2011, 06:42 AM
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Replies: 5
Views: 6,932
As ngsbee mentioned:
you must make...
As ngsbee mentioned:
you must make consistence of chromosome name. Sometime, 1, 2,3,...22,X,Y, M used as chromosome name, but sometime chr1, chr2,chr3,...chrM were used as chromosome name. You...
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Forum: Introductions
04-15-2011, 06:53 PM
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Replies: 4
Views: 1,675
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Forum: Bioinformatics
03-06-2011, 10:45 AM
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Replies: 3
Views: 2,251
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Forum: Bioinformatics
11-20-2010, 04:25 AM
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Replies: 11
Views: 2,254
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Forum: RNA Sequencing
11-03-2010, 01:13 PM
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Replies: 15
Views: 19,058
you should be careful of these genes. In my...
you should be careful of these genes. In my points, you do not need calculate the fold change. You can split these cases into two situations: one condition is larger or smaller than threshold, e.g....
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Forum: Events / Conferences
09-27-2010, 11:07 AM
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Replies: 9
Views: 7,923
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Forum: Bioinformatics
07-30-2010, 05:43 AM
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Replies: 5
Views: 6,963
yes, If you only want to get the location...
yes, If you only want to get the location transfer, liftover is faster. In the mean time, many novel cases need to be consider, just as you said you can get more info from the newer assembly....
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Forum: Bioinformatics
07-29-2010, 12:53 PM
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Replies: 5
Views: 6,963
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Forum: Bioinformatics
06-21-2010, 07:09 AM
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Replies: 11
Views: 12,469
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Forum: General
06-18-2010, 02:19 AM
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Replies: 2
Views: 13,954
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Forum: De novo discovery
06-18-2010, 02:12 AM
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Replies: 4
Views: 3,564
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Forum: Bioinformatics
06-14-2010, 05:12 AM
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Replies: 8
Views: 14,532
"export PATH only change the current session....
"export PATH only change the current session. Once you log out, anything you've added to the path will be removed. "
If you do not log out, I guess tophat does not accept this way of PATH setting....
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Forum: Bioinformatics
06-09-2010, 10:14 AM
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Replies: 6
Views: 4,315
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Forum: Illumina/Solexa
06-08-2010, 01:25 PM
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Replies: 5
Views: 2,450
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Forum: Illumina/Solexa
06-08-2010, 01:22 PM
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Replies: 1
Views: 1,490
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Forum: Bioinformatics
06-08-2010, 01:11 PM
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Replies: 8
Views: 14,532
just do as zorph said. I think you need learn...
just do as zorph said. I think you need learn something about Linux/Unix/Mac.
.bashrc or .bash_profile locate in your home folder.
In the terminal, you can use "cd ~" to enter. then use "ls -a"...
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Forum: Literature Watch
04-09-2010, 12:16 PM
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Replies: 1
Views: 3,030
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Forum: RNA Sequencing
04-09-2010, 12:11 PM
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Replies: 5
Views: 3,512
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Forum: RNA Sequencing
04-09-2010, 12:06 PM
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Replies: 2
Views: 3,383
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Forum: Illumina/Solexa
02-25-2010, 06:29 AM
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Replies: 2
Views: 3,169
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Forum: RNA Sequencing
01-24-2010, 09:14 PM
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Replies: 14
Views: 7,025
RE:
1. for more information of gff3, you can...
RE:
1. for more information of gff3, you can search by google. It is complex to get gff3 for human genome. First, you get gtf from ensembl, then convert them to gff3 by some perl script...
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Forum: RNA Sequencing
01-20-2010, 03:54 PM
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Replies: 11
Views: 14,407
in biomart:http://www.biomart.org/
first...
in biomart:http://www.biomart.org/
first martview-->choose database(ensembl56 sanger UK)--> GRCH37-->fiters-->gene-->gene type-->rRNA
you can get more information from this websit
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Forum: RNA Sequencing
01-20-2010, 12:09 AM
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Replies: 2
Views: 4,401
I think your question is relative to multiple...
I think your question is relative to multiple hits of one read. It one hard work. Some recent papers published in Bioinformatics have put forward some approaches to resolve this problem, you can...
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Forum: RNA Sequencing
01-19-2010, 11:58 PM
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Replies: 11
Views: 14,407
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