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Search: Posts Made By: rajeshkmaurya08
Forum: Bioinformatics 03-13-2017, 10:59 PM
Replies: 2
Views: 7,582
Posted By rajeshkmaurya08
Actually i would like to know how you running...

Actually i would like to know how you running this command.
For me it is showing Unknown option.
Forum: Bioinformatics 03-13-2017, 10:48 PM
Replies: 10
Views: 10,019
Posted By rajeshkmaurya08
Its is again showing warning like: plink:...

Its is again showing warning like:

plink: unknown option "--file"
plink: unknown option "--make-bed"
Forum: Bioinformatics 02-23-2017, 12:36 AM
Replies: 3
Views: 3,126
Posted By rajeshkmaurya08
Can anybody help to figure out this problem?

Can anybody help to figure out this problem?
Forum: General 02-22-2017, 03:42 AM
Replies: 1
Views: 1,248
Posted By rajeshkmaurya08
please use ncbi-blast.

please use ncbi-blast.
Forum: Bioinformatics 02-21-2017, 09:20 PM
Replies: 8
Views: 9,103
Posted By rajeshkmaurya08
yes you right, but vcf tool was not giving...

yes you right,
but vcf tool was not giving output.

so i tried with tabix

tabix -h file_name 21

it vcf file of chr 21 but i am not sure about its ending statement.

is it right to extract...
Forum: Bioinformatics 02-21-2017, 03:41 AM
Replies: 2
Views: 1,522
Posted By rajeshkmaurya08
Hi, I am also getting some problem while using...

Hi,
I am also getting some problem while using vcf-consensus...
i used command
cat chr21.fa | vcf-consensus chr21_a.vcf.gz > chr21_ref21.fa

but i got following error.

The sequence "21" not...
Forum: Bioinformatics 02-20-2017, 12:10 AM
Replies: 8
Views: 9,103
Posted By rajeshkmaurya08
i have applied this vcftools but it showing...

i have applied this vcftools but it showing following program
My input command :
vcftools --gzvcf ExAC.r0.3.1.sites.vep.vcf.gz --chr chr21 --out chr21 --recode

And error is showing like this:
...
Forum: Bioinformatics 02-18-2017, 02:53 AM
Replies: 1
Views: 985
Posted By rajeshkmaurya08
welcome,,,

welcome,,,
Forum: Bioinformatics 02-17-2017, 09:07 PM
Replies: 0
Views: 1,065
Posted By rajeshkmaurya08
How to extract individual chromosome from vcf file?

Hi,
I downloaded the vcf file , but i would like to download the particular chromosome information..

May i get any help because i tried with vcf tool command but it was not showing result.
Forum: Bioinformatics 02-09-2017, 09:04 PM
Replies: 3
Views: 999
Posted By rajeshkmaurya08
it is fasta reference tool maker from GATK.

it is fasta reference tool maker from GATK.
Forum: Bioinformatics 02-09-2017, 08:33 PM
Replies: 1
Views: 1,581
Posted By rajeshkmaurya08
can anybody help me to short out the problem?

can anybody help me to short out the problem?
Forum: Bioinformatics 02-09-2017, 06:33 PM
Replies: 3
Views: 999
Posted By rajeshkmaurya08
fasta reference tool maker

How to download the Fasta reference tool maker software?
and what are the file input have to give?
Please domonstrate?
Forum: Bioinformatics 02-09-2017, 08:32 AM
Replies: 1
Views: 1,581
Posted By rajeshkmaurya08
To find the difference in base pair position of two fasta file

Hello,
I am just beginner in Perl,
I have Two fasta file of different length.
I would like to align them to find difference in nucleotide position.

Output should be like this
Total length of...
Forum: Bioinformatics 02-08-2017, 07:38 PM
Replies: 15
Views: 6,829
Posted By rajeshkmaurya08
How to find SNP by comparing two fasta file using perl code?

Hello,
I am just beginner in Perl,
I have Two fasta file of different length.
I would like to align them to find difference in nucleotide postion.

Output should be like this
Total length of...
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