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Forum: Bioinformatics 08-14-2017, 11:07 AM
Replies: 2
Views: 4,595
Posted By vsmuir
Some solutions

If anyone else has run into this problem, I've found a couple of things that seem to help.

1) If you have similar problems with prefetch or fasp downloads fail:
Simply remove the -a and -t flags....
Forum: Bioinformatics 08-09-2017, 03:17 PM
Replies: 2
Views: 4,595
Posted By vsmuir
SRAtoolkit - prefetch and fastq-dump problems

I'm attempting to download a ton of protected GTEx data using sratoolkit.

Using fastq-dump alone for accession numbers is painfully slow. My Mac is taking 2-4 hours to get each ~3Gb file.
Forum: Bioinformatics 10-10-2016, 04:32 PM
Replies: 1
Views: 1,904
Posted By vsmuir
Limma selectModel output

I've been given a large RNAseq dataset on a biological process which I know little about. There is a ton of associated sample data, and I've built a ton of different linear models that include...
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