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adapter trimming alignment annotation annovar assembly atac-seq bam bbmap bioanalyzer bioconductor bioinfomatics bioinformactics bioinformatics blast bowtie bwa chip-seq cluster density covaris coverage cuffcompare cuffdiff cufflinks cuffmerge cummerbund deseq deseq2 edger error fastq fastqc fpkm gatk genome hisat2 htseq-count illumina install mapping metagenomics methylation mirna miseq newbler nextera nextseq ngs normalization pacbio pindel pipeline python quality rna-seq rnaseq sam samtools sanger/illumina 1.9 sequencing snp star tophat tophat2 trimmomatic trinity truseq varscan vcf vcftools velvet


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