Forum: Bioinformatics
06-09-2020, 10:39 PM
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Replies: 0
Views: 718
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Forum: Bioinformatics
05-10-2020, 12:57 AM
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Replies: 0
Views: 864
Donor-Participants species probability
Hi all,
We are doing a microbiome study with FMT (Fecal Microbiota transplant), and I have a statistic question about something we found.
Background
In the experiment there are 2 donors and 11...
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Forum: Bioinformatics
11-02-2016, 01:07 AM
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Replies: 1
Views: 1,118
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Forum: General
02-11-2016, 12:50 AM
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Replies: 1
Views: 1,150
BRCA sub type information in TCGA
Hi,
I am looking for the Breast Cancer molecular subtype information in TCGA.
I searched in the clinical data files, but i havnt found it there.
What I found is "stageing" and the...
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Forum: Bioinformatics
02-08-2016, 03:34 AM
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Replies: 0
Views: 997
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Forum: Bioinformatics
12-15-2015, 03:29 AM
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Replies: 4
Views: 2,228
Hi! great! i think... ;)
What i understand...
Hi! great! i think... ;)
What i understand from this format is that if the "Segment_Mean" negative, there is assuming for "loss", and if its possitive assuming for "gain".
If i will...
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Forum: Bioinformatics
12-14-2015, 12:58 PM
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Replies: 4
Views: 2,228
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Forum: Bioinformatics
12-14-2015, 12:37 PM
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Replies: 0
Views: 984
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Forum: Bioinformatics
12-14-2015, 11:44 AM
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Replies: 4
Views: 2,228
CNV from TCGA level 3
Hi all!
I am looking for CNV public profiles for the TCGA data to use as a reference.
Do you know if there are TCGA level 3 copy number profiles that available for more than GBM, OV and LUSC?
...
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Forum: Bioinformatics
12-03-2015, 03:14 AM
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Replies: 3
Views: 1,423
Thanks lindenb!
I saw your post before,but i...
Thanks lindenb!
I saw your post before,but i have there a compliation error and our system admin is not in the area.. so we cant install anything right now..
The error is about the "Requires ...
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Forum: Bioinformatics
12-03-2015, 01:08 AM
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Replies: 3
Views: 1,423
Linux based enzyme restriction tool
Hi all,
I guess that the answer should be simple, but honestly i googled it and didnt find the answe...
What im looking for is linux based tool to recognize enzyme restriction sites:
1) over the...
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Forum: General
10-14-2015, 01:51 PM
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Replies: 4
Views: 1,745
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Forum: Bioinformatics
07-15-2015, 02:07 PM
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Replies: 6
Views: 1,723
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Forum: Bioinformatics
07-14-2015, 02:59 AM
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Replies: 6
Views: 1,723
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Forum: Bioinformatics
07-13-2015, 05:15 AM
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Replies: 6
Views: 1,723
Hi GenoMax,
Yes, i saw this already and it's...
Hi GenoMax,
Yes, i saw this already and it's not detailed enough, at least for me..
I sent email to the author and waiting for his response..
I was sure that every package in R must have vignette/...
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Forum: Bioinformatics
07-13-2015, 04:51 AM
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Replies: 6
Views: 1,723
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Forum: Bioinformatics
07-09-2015, 06:28 AM
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Replies: 6
Views: 1,723
ReadDepth manual or example
Hi all,
Do u know where can i find the manual or normal example of ReadDepth tool?
not the same example as here:
https://github.com/chrisamiller/readdepth
Its not detailed enough...
it R...
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Forum: De novo discovery
07-04-2015, 11:02 AM
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Replies: 2
Views: 2,117
Any ideas?
I will make it simpler..
How to...
Any ideas?
I will make it simpler..
How to have functional annotation when you have more than 1 orgaism in your data?
Now im using David, but its limit to single organism..
Thanks!
Pap
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Forum: De novo discovery
06-25-2015, 02:23 AM
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Replies: 2
Views: 2,117
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Forum: Bioinformatics
06-24-2015, 02:30 AM
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Replies: 4
Views: 1,185
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Forum: Bioinformatics
06-22-2015, 12:35 AM
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Replies: 4
Views: 1,185
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Forum: Bioinformatics
06-21-2015, 04:13 PM
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Replies: 4
Views: 1,185
Downloading TrEMBL
Hi all,
Does anyone know why when im trying to download from uniprot
http://www.uniprot.org/downloads
the TrEMBL dataset with wget like this:
wget...
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Forum: Bioinformatics
12-16-2014, 01:10 AM
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Replies: 1
Views: 1,288
Alternatives to Nature brief communication
Hi all,
I am not sure that this is the right forum for my questions, but i will try..
We wrote a brief communication paper and we sent it to Nature Methods, and it was rejected..
Now, we are...
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Forum: Bioinformatics
11-25-2014, 07:02 AM
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Replies: 6
Views: 1,948
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Forum: Bioinformatics
11-25-2014, 04:10 AM
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Replies: 6
Views: 1,948
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