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Forum: Bioinformatics 02-12-2020, 03:14 AM
Replies: 0
Views: 420
Posted By slefevre
featureCounts output format error

Hi

I am trying to use the latest version of featureCounts (Subread package version 2.0.0) with the following command (based on Chothani, S. 2019. Current Protocols in Molecular Biology, 129, e108....
Forum: RNA Sequencing 02-29-2016, 06:36 AM
Replies: 0
Views: 1,287
Posted By slefevre
stranded RNAseq parameters

Hi

I know people have posted about this before, but amazingly I did not find an answer to particular thing I am confused about, which is the upstreams and downstreams as opposed to forward and...
Forum: Bioinformatics 08-20-2015, 05:46 AM
Replies: 13
Views: 9,524
Posted By slefevre
That makes sense - and even better, it seems to...

That makes sense - and even better, it seems to be working. Thank you so much!
Forum: Bioinformatics 08-20-2015, 04:13 AM
Replies: 13
Views: 9,524
Posted By slefevre
Hi - for starters, I am a completely newbie at...

Hi - for starters, I am a completely newbie at this, so bare with me if it's basic.

I understand how to do a for loop with one object, but if you have paired-end reads, trim-galore takes two files...
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