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Forum: General 05-15-2014, 06:20 AM
Replies: 2
Views: 3,482
Posted By AddDNAse
Open up the annotation file you're using (.gtf)...

Open up the annotation file you're using (.gtf) and check how the chromosomes are labeled. Make sure you see the same thing in your sequence file (genome.fa). Specifically, if you are naming your...
Forum: Bioinformatics 05-14-2014, 01:57 PM
Replies: 33
Views: 34,307
Posted By AddDNAse
Hi Loyal, First of all, I'm using the S....

Hi Loyal,

First of all, I'm using the S. cerevisiae annotation and genome from Ensembl (found on the Cufflinks website). I have modified the annotation to include a few smallRNAs.

This list I...
Forum: Bioinformatics 05-14-2014, 01:14 PM
Replies: 33
Views: 34,307
Posted By AddDNAse
Similar Problem

Hi everyone,

I hope someone is still checking this thread. I am having a very similar problem. I have tried all of the troubleshoots posted here. I keep getting the following:
tracking_id...
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