Forum: Bioinformatics
07-20-2017, 01:30 AM
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Replies: 4
Views: 1,688
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Forum: The Pipeline
07-16-2017, 08:42 PM
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Replies: 1
Views: 11,070
Mitochondrial heteroplasmy level detection
Hi, all
We are currently study mitochondrial genomics, however, find it confusing when try to detect the heteroplasmy level. Can some explain how to detect the heteroplasmy level? Some one said,...
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Forum: Bioinformatics
07-16-2017, 08:33 PM
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Replies: 4
Views: 1,688
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Forum: Bioinformatics
07-02-2017, 07:24 PM
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Replies: 4
Views: 1,688
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Forum: Bioinformatics
04-27-2017, 06:47 PM
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Replies: 4
Views: 2,466
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Forum: Bioinformatics
04-25-2017, 12:28 AM
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Replies: 4
Views: 2,466
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Forum: Bioinformatics
04-24-2017, 06:21 PM
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Replies: 4
Views: 2,466
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Forum: Genomic Resequencing
04-23-2017, 06:02 PM
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Replies: 0
Views: 5,017
Somatic Mutation Amount
Hi,all
We are currently study the somatic mutations from blood sample from healthy individuals, and I am trying to build a pipeline to distinguish somatic mutations from germline mutations in these...
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Forum: Bioinformatics
09-22-2015, 07:15 PM
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Replies: 4
Views: 1,972
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Forum: Bioinformatics
09-20-2015, 10:17 PM
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Replies: 0
Views: 1,311
Panel DNA data Remove Duplicates
Hi,all
We are doing panel data for variants calling and need to make it clear whether we should remove the duplicates with picard, I do not know the capture method, so, let us suppose there would...
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Forum: Bioinformatics
09-20-2015, 06:56 PM
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Replies: 4
Views: 1,972
Thanks for your reply
Thanks for your kind reply Alex, I have checked the Log.progress.out, it contains nothing but the title after a whole night's running with only one sample with 12 thread. Do you have any other...
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Forum: Bioinformatics
09-16-2015, 08:32 PM
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Replies: 4
Views: 1,972
Computing time evaluate
Hi,all
I am doing RNA-seq alignment with STAR, my workstation is dual core(E5-2620v3), 12 thread in total, 64G RAM. I am running 9 mouse RNA-seq sample data(1GB/sample), parallelly, two days has...
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Forum: RNA Sequencing
07-30-2015, 07:09 PM
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Replies: 2
Views: 1,051
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Forum: RNA Sequencing
07-30-2015, 02:17 AM
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Replies: 2
Views: 1,051
Paired RNA-seq data for Arabidopsis
Hi, all
I have just built a RNA-seq pipeline for Arabidopsis, and do need a set of paired sample of RNA-seq PE or SE data for Arabidopsis, can someone tell me where can I find this kind of data....
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Forum: Bioinformatics
07-22-2015, 07:46 PM
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Replies: 0
Views: 996
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Forum: Ion Torrent
11-10-2013, 04:55 PM
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Replies: 7
Views: 5,352
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Forum: Ion Torrent
11-08-2013, 09:40 PM
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Replies: 7
Views: 5,352
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Forum: Ion Torrent
11-08-2013, 05:02 AM
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Replies: 7
Views: 5,352
Ion Proton data analysis software
I am a newbie in this field, can anyone give me a list on the name of the current available software for Ion Proton data analysis?References recommendation is also welcome.Thank you guys so much!:)
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Forum: General
11-06-2012, 01:37 PM
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Replies: 1
Views: 1,200
Bioperl beginner's program
!usr/bin/perl -w
use Bio::DB::GenBank;
use Bio::Restriction::EnzymeCollection;
use Bio::Restriction::Analysis;
my $gb=new Bio::DB::GenBank();
my $seq=$gb->getSeqbyacc('AF303112');
print...
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