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Forum: RNA Sequencing 02-01-2017, 09:23 AM
Replies: 1
Views: 1,612
Posted By Drake
GAGE update and result analysis

Hi,
I have recently started to use gage and I am bit confused about the pathway results data.

1) My pathway results after running gage contain 114 pathways (80 of them are NA); however, when I...
Forum: Bioinformatics 05-20-2009, 06:01 AM
Replies: 99
Views: 42,690
Posted By Drake
Thanks a lot! I really appreciate!

Thanks a lot! I really appreciate!
Forum: Bioinformatics 05-19-2009, 06:57 AM
Replies: 99
Views: 42,690
Posted By Drake
Thanks a lot for your explanation! ... This is...

Thanks a lot for your explanation! ... This is pretty much the same as MAQ does .. and I'm familiar with that.

My question was rather how the 'variant frequency' is calculated?
Referring to my...
Forum: Bioinformatics 05-18-2009, 01:05 PM
Replies: 99
Views: 42,690
Posted By Drake
variant frequency

Hello again,
Can anyone explain me how the 'VariantFrequency' in the stat file is calculated?
I mean, it's obvious how the frequency is calculated for one variant base. But how is it done for two...
Forum: Bioinformatics 05-06-2009, 08:36 AM
Replies: 99
Views: 42,690
Posted By Drake
Hi again, I became really interested in...

Hi again,
I became really interested in MapView; but unfortunately there are a few things making the output hard to trust.
For example: I have a bad reference strain (bad means that there are...
Forum: Bioinformatics 05-02-2009, 05:27 AM
Replies: 99
Views: 42,690
Posted By Drake
Yes .. that's the way I do it now. But I am...

Yes .. that's the way I do it now.

But I am looking for something to do it simultaneously. I have attached a screenshot where I have put two views horizontal. Now it would be nice, to have these...
Forum: Bioinformatics 05-01-2009, 09:02 PM
Replies: 99
Views: 42,690
Posted By Drake
There is another question I have and you might...

There is another question I have and you might think about?
I am doing a lot of comparisons and therefore I am jumping between two views a lot.
So for my analysis it would be useful to load e.g....
Forum: Bioinformatics 05-01-2009, 08:51 PM
Replies: 99
Views: 42,690
Posted By Drake
That's awesome! ... You added this feature very...

That's awesome! ... You added this feature very quick! Thanks a lot! I really appreciate!
Forum: Bioinformatics 05-01-2009, 11:22 AM
Replies: 99
Views: 42,690
Posted By Drake
Thanks for your answers .. It's a pity that...

Thanks for your answers ..

It's a pity that there is no simple button to export this region ... so I will stay with my MAQ flat files in cyqwin ...
Forum: Bioinformatics 04-28-2009, 01:47 PM
Replies: 99
Views: 42,690
Posted By Drake
Hello, is there a way to export the SNP list to...

Hello,
is there a way to export the SNP list to a flat file? Like the one maq produces?

Thanks!
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