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Forum: Bioinformatics 03-01-2017, 02:55 PM
Replies: 3
Views: 4,568
Posted By BioBing
I solved it!!! I deleted the -trimlog part,...

I solved it!!!

I deleted the -trimlog part, and suddenly it worked!

This is the code I used, in case others have similar issues:

I solved it! By deleting -trimlog, -inbase and -outbase - as...
Forum: Bioinformatics 03-01-2017, 02:31 PM
Replies: 3
Views: 4,568
Posted By BioBing
Hi Mastal, Thank you so much for responding....

Hi Mastal,

Thank you so much for responding. I tried as you suggested, but it is still not working

java -jar trimmomatic-0.36.jar PE –trimlog logfile L001_R1.fastq L001_R2.fastq...
Forum: Bioinformatics 03-01-2017, 11:32 AM
Replies: 3
Views: 4,568
Posted By BioBing
Trimmomatic - unknown trimmer error?

Hi all,

I am really struggling with Trimmomatic these days and the frustration level is rising (I have to meet a deadline). For multiple days Trimmomatic, on usegalaxy.org, has given me an error...
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