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Search: Posts Made By: dpryan
Forum: Bioinformatics 01-10-2016, 03:02 AM
Replies: 2
Views: 1,896
Posted By dpryan
Try: bwa mem -t 8 hg19.fa R1_001.fastq.gz...

Try:
bwa mem -t 8 hg19.fa R1_001.fastq.gz R2_001.fastq.gz > alignment.sam

I imagine that the non-existent "-I" option mucked things up.
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