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Forum: RNA Sequencing 08-19-2019, 07:52 AM
Replies: 0
Views: 2,431
Posted By Aishah
Running Deconseq

I launched deconseq on my Linux OS, to remove bacterial contamination from a 20 million reads RNA-seq dataset?
Any idea about the how long it would take for the analysis to complete?
Forum: RNA Sequencing 08-08-2019, 01:00 AM
Replies: 1
Views: 2,127
Posted By Aishah
RNA-seq data QC

Regarding trimming of raw RNA-seq datasets, do we need to trim off primer sequences despite FASTQC not indicating these as overrepresented?
Forum: Introductions 08-08-2019, 12:52 AM
Replies: 0
Views: 928
Posted By Aishah
RNA-seq data QC

Regarding trimming of raw RNA-seq datasets, do we need to trim off primer sequences though FASTQC did not indicate these as overrepresented?
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