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16s alignment annotation assembly atac-seq bam bbduk bbmap bioanalyzer bioconductor bioinfomatics bioinformactics bioinformatics bowtie bowtie2 bwa cancer chip-seq coverage cuffdiff cufflinks de novo assembly deseq deseq2 differential expression dna dna-seq fasta gatk genetics genome genome assembly genomics hisat2 htseq-count illumina index introduction library prep machine learning metagenomics methylation microbiome miseq mpileup nanopore nextera ngs pacbio quality reads rna rna-seq rnaseq rna sequencing samtools sequencing snp software solid spades star statistics tophat trimmomatic truseq vcf webinar wgs workshop

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