SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 10 of 10
Search took 0.00 seconds.
Search: Posts Made By: najoshi
Forum: Bioinformatics 09-22-2020, 06:02 PM
Replies: 0
Views: 972
Posted By najoshi
Register now for online PacBio Iso-Seq workshop next week

The UC Davis Bioinformatics Core (https://bioinformatics.ucdavis.edu) is pleased to announce that we will be continuing our remote workshops this fall, after a successful summer of seven multi-day...
Forum: Bioinformatics 07-13-2020, 05:28 PM
Replies: 1
Views: 1,264
Posted By najoshi
Upcoming online UC Davis Bioinformatics Core workshops

Join us in July and August to explore genome assembly, mRNA-Seq analysis, and Single-Cell analysis! We’re excited to follow up our three recent successful remote workshops with four more weeks of...
Forum: Bioinformatics 07-08-2020, 04:12 AM
Replies: 0
Views: 1,242
Posted By najoshi
Genotype call incorrect in freebayes output?

So I ran freebayes 1.3.1 with all the default parameters on dog dna samples. I am getting this result for one of the samples (although it seems to be occurring in other samples too):



I'm only...
Forum: Bioinformatics 05-26-2020, 10:06 PM
Replies: 0
Views: 1,171
Posted By najoshi
Last chance to register for online RNA-Seq Workshop June 1-4

The Bioinformatics Core at UC Davis (http://bioinformatics.ucdavis.edu) is offering our popular RNA-Seq analysis workshop online. Next week, join us for a mixture of lecture-based instruction and...
Forum: Events / Conferences 07-12-2018, 06:08 PM
Replies: 0
Views: 2,124
Posted By najoshi
Variant Analysis, Bioinformatics Prerequisites, & Genome Browser workshops @ UC Davis

Announcing Three Upcoming Workshops at University of California, Davis (Davis, CA, USA)

UCSC Genome Browser … Bioinformatics Prerequisites … and Variant Analysis!

Each of these workshops is...
Forum: Academic/Non-Profit Jobs 11-20-2013, 03:01 PM
Replies: 0
Views: 1,794
Posted By najoshi
Unix System Administrator for the UC Davis Bioinformatics Core (Davis, CA)

The UC Davis Bioinformatics Core (http://bioinformatics.ucdavis.edu/) at the UC Davis Genome Center provides data analysis, infrastructure services, and training to the research community. We are...
Forum: Bioinformatics 10-01-2013, 06:54 PM
Replies: 0
Views: 2,691
Posted By najoshi
snpEff database provenance and custom builds

I am currently using snpEff to do effect prediction and I had a few questions. First, does someone have detailed information about the provenance of the data that was used to create the databases? ...
Forum: Bioinformatics 03-31-2011, 06:18 PM
Replies: 1
Views: 2,657
Posted By najoshi
samtools colorspace calmd is incredibly slow

Hi all,

I'm running samtools version 0.1.14 (and bwa version 0.5.8c) and I am
trying to do solid colorspace analysis on some single-end reads. I
indexed the reference using colorspace and I...
Forum: Bioinformatics 01-05-2011, 03:03 AM
Replies: 1
Views: 2,824
Posted By najoshi
Getting pileup to fastq with indels ala samtools.pl

Hi all,

So I need a program that will essentially do the functionality of samtools.pl pileup2fq, but I need it to take into account indels. It appears that pileup2fq only uses indels to determine...
Forum: Bioinformatics 04-09-2010, 04:40 PM
Replies: 1
Views: 2,380
Posted By najoshi
Problem running RepeatModeler (using WUBlast)

Hi all,

I am trying to run RepeatModeler on a fasta file that has about 415000 reads. What is strange is that the program runs through 4 rounds with no problem, but then in the 5th round I get...
Showing results 1 to 10 of 10

 


All times are GMT -8. The time now is 01:35 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO