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Forum: Bioinformatics 08-28-2017, 11:33 AM
Replies: 9
Views: 7,586
Posted By Brian Bushnell
Actually, that should not work at all. The JGI...

Actually, that should not work at all. The JGI RefSeq sketch server is using nucleotide references rather than protein references, so you should try without using translate6frames. To use an amino...
Forum: Bioinformatics 08-07-2017, 03:19 PM
Replies: 9
Views: 7,586
Posted By Brian Bushnell
Hi Nate, Thanks for letting me know! I...

Hi Nate,

Thanks for letting me know! I accidentally included old blacklists in 37.38. That's fixed in 37.40 which I just released. I validated that downloading it from SourceForge and running...
Forum: Bioinformatics 02-03-2017, 01:12 PM
Replies: 9
Views: 7,586
Posted By Brian Bushnell
Oh, good! Currently, by the way, that...

Oh, good! Currently, by the way, that comparesketch.sh (for local comparisons) currently has more configurability for displaying results than sendsketch.sh (in terms of being able to specify number...
Forum: Bioinformatics 02-03-2017, 08:46 AM
Replies: 9
Views: 7,586
Posted By Brian Bushnell
MinHash Sketch - A Tool for Rapid Sequence Comparison

MinHash Sketch is a method of rapidly comparing large strings or sets. In genomics, you can use it like this:

1) Gather all the kmers in a genome.
2) Apply a hash function to them.
3) Keep the...
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