Forum: Bioinformatics
03-25-2019, 09:28 AM
|
|
Replies: 1
Views: 3,880
There is a problem with this kind of analysis...
There is a problem with this kind of analysis from statistical point of view. (more than two groups)
In practice, DESEq2 use a chi-squared like strategy and a binominal test, the analysis is better...
|
|
Forum: Bioinformatics
03-25-2019, 09:20 AM
|
|
Replies: 1
Views: 1,839
Why you are using Python?
You can look for...
Why you are using Python?
You can look for Biopython module. There is a function to import your seq and alignment.
The same can be made (with more options) in linux terminal w/ STAR algorithm.
|
|
Forum: Bioinformatics
03-25-2019, 09:14 AM
|
|
Replies: 2
Views: 1,003
I think we need more information.
What is the...
I think we need more information.
What is the design of your study? why HTSeq?
I never worked with HTSeq before but i have experience with edgeR, DESeq2 and NOISeq, but i can be more useful if i...
|
|
Forum: Bioinformatics
03-25-2019, 09:07 AM
|
|
Replies: 2
Views: 870
Hi titti
First of all, try to consult the...
Hi titti
First of all, try to consult the bioconductor repository to find a package that is suitable for your needs (https://www.bioconductor.org) as you are new to bioinformatics, there is support...
|
|
Forum: Bioinformatics
09-16-2017, 06:37 PM
|
|
Replies: 0
Views: 1,723
Plotting DGE on R
Good night!
I'm trying to make a plot of my DGE through R from NOISeq + ComplexHeatmap packages.
I have two dataframes, on the first i have the samples as columns and transcripts as rows. On the...
|
