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Search: Posts Made By: Aurelien Mazurie
Forum: Bioinformatics 03-01-2011, 10:41 AM
Replies: 10
Views: 5,983
Posted By Aurelien Mazurie
It works, thanks! For those interested I wrote a...

It works, thanks! For those interested I wrote a Python script to do the job, which is enclosed.

Aurelien
Forum: Bioinformatics 03-01-2011, 08:45 AM
Replies: 10
Views: 5,983
Posted By Aurelien Mazurie
Interesting. I checked my SAM files, and the @SQ...

Interesting. I checked my SAM files, and the @SQ lines only have two colons:

@HD VN:1.0 SO:sorted
@SQ SN:EG:bd_7x3 LN:450
@SQ SN:EG:bd_6x3 LN:450
@SQ SN:EG:bd_36x35 ...
Forum: Bioinformatics 02-28-2011, 09:03 AM
Replies: 10
Views: 5,983
Posted By Aurelien Mazurie
I had exactly the same problem; sorting the BAM...

I had exactly the same problem; sorting the BAM file didn't help.
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