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Forum: Bioinformatics 04-04-2017, 10:30 AM
Replies: 4
Views: 1,659
Posted By chammer
Perfect, thanks a lot for your help, Devon! ...

Perfect, thanks a lot for your help, Devon!

Best,
Chris
Forum: Bioinformatics 04-04-2017, 01:28 AM
Replies: 4
Views: 1,659
Posted By chammer
Thanks a lot! With respect to the most...

Thanks a lot!
With respect to the most important comparisons, which is VPU "wt" vs. "stop", leaving out the non-infected samples works.
But if I want to compare non-infected vs. infected samples,...
Forum: Bioinformatics 04-03-2017, 06:43 AM
Replies: 4
Views: 1,659
Posted By chammer
Question DESeq2 collinearity issue

Hi everybody,

I have been trying to use DESeq2 for analyzing RNA-seq data, and ran into a problem.

The conditions table looks like this:


sample donor virus vpu
DonorA1_01 A1 none mock...
Forum: Bioinformatics 03-14-2017, 06:10 AM
Replies: 9
Views: 10,393
Posted By chammer
I have been trying to use DESeq2 for analysing...

I have been trying to use DESeq2 for analysing RNA-seq data in R and I have a small question about that.

So to start, the conditions table looks like this:


sample donor virus ...
Forum: Pacific Biosciences 06-25-2014, 04:49 AM
Replies: 0
Views: 1,493
Posted By chammer
Targeted sequencing with barcodes

Hi everybody,

I'm new to SMRT sequencing, so I thought you guys might be able to give me some advice regarding a project we're currently planning. So thanks a lot already in advance!

Basically,...
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