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Forum: Bioinformatics 05-15-2011, 07:06 PM
Replies: 3
Views: 2,570
Posted By markr
Update: I ran cuffdiff on my computer (in verbose...

Update: I ran cuffdiff on my computer (in verbose mode), and have discovered that it seems to be changing the gene position data before measuring the number of reads. Does anyone have any ideas to...
Forum: Bioinformatics 05-13-2011, 05:23 AM
Replies: 3
Views: 2,570
Posted By markr
Modification of reference genome annotation by cufflinks/cuffdiff?

Hi,

I am totally new to NGS technologies. We are just now starting an RNA-seq project, and I am trying to figure out how to find differentially expressed genes with my Illumina (100bp) reads in...
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