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Forum: Bioinformatics 01-04-2016, 08:45 AM
Replies: 0
Views: 863
Posted By LJ_ngs
RepeatMasker v4.0.5 no output created

I am running RepeatMasker v4.0.5

the command line is :

RepeatMasker -lib my_own_lib.fasta -dir output_directory output_name


This command runs fine on two of my datasets (trimmed repeats)...
Forum: Bioinformatics 02-12-2013, 01:40 AM
Replies: 1
Views: 1,012
Posted By LJ_ngs
I have now tried changing the @ symbol with no...

I have now tried changing the @ symbol with no success. I also tried changing the header to read HWI instead of @HWI neither option worked. does anyone have any suggestions please?
Forum: Bioinformatics 02-11-2013, 06:34 AM
Replies: 1
Views: 1,012
Posted By LJ_ngs
SOAPdenovotrans file read error

I am trying to assemble paired read illumina data using the config file:

[LIB]
max_rd_len=100
asm_flags=3
rank=1
q1= JaneD_GCCAAT_L006_R1_noadap_001_Asssss.fastq_filtered_trimmed
q2=...
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