Forum: Bioinformatics
04-16-2015, 08:04 AM
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Replies: 676
Views: 176,849
Hi Brian,
I am trying to extract reads from...
Hi Brian,
I am trying to extract reads from a bbmap sam-file using picard SamToFastq and get an error about unpaired reads. Whether I tell BBmap to output paired only or not, picard SamToFastq...
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Forum: Bioinformatics
03-17-2015, 09:44 AM
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Replies: 2
Views: 1,115
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Forum: Bioinformatics
03-17-2015, 09:40 AM
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Replies: 8
Views: 2,830
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Forum: Introductions
12-07-2014, 11:44 PM
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Replies: 2
Views: 885
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Forum: Bioinformatics
10-23-2014, 03:05 AM
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Replies: 0
Views: 935
Repeatmodeler reproducibility
Dear all,
I am trying to identify repeats in a plant genome assembly using RepeatModeler. Currently my understanding is that RepeatModeler encompasses several repeat finding tools, some of which...
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Forum: General
10-23-2014, 02:54 AM
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Replies: 1
Views: 1,511
Hi,
For annotating plant mitochondrial...
Hi,
For annotating plant mitochondrial genomes mitofy seems fine, what is it that you doubt about the results? If you want to gain insight into the repeats present in your mitochondrial genome I...
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Forum: Bioinformatics
10-20-2014, 06:38 AM
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Replies: 676
Views: 176,849
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Forum: Bioinformatics
07-31-2014, 06:42 AM
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Replies: 6
Views: 1,240
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Forum: Bioinformatics
07-17-2013, 08:35 AM
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Replies: 0
Views: 769
Extract node information from de Bruijn graph
I want to extract some specific properties of the nodes of the de Bruijn graph, following the methods of this publication: Wetzel et al.: Assessing the benefits of using mate-pairs to resolve repeats...
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