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Forum: Bioinformatics 05-10-2011, 07:51 PM
Replies: 14
Views: 3,085
Posted By chip_seq
Hi Simon, Thank you for help previously. ...

Hi Simon,

Thank you for help previously.
after i removed strange characters from seq files and mapped them to genome i got 0% coverage which suggests severe problem although i'm using Corona lite...
Forum: Bioinformatics 04-26-2011, 06:56 PM
Replies: 14
Views: 3,085
Posted By chip_seq
Thank you very much for your kind help

Thank you very much for your kind help
Forum: Bioinformatics 04-26-2011, 02:48 AM
Replies: 14
Views: 3,085
Posted By chip_seq
Thank you very much. however i got many skipped...

Thank you very much.
however i got many skipped lines ,do those skipped lines will affect the output
Skipping odd looking sequence 'Q{???_F3'
Skipping unexpected line :...
Forum: Bioinformatics 04-25-2011, 07:27 PM
Replies: 14
Views: 3,085
Posted By chip_seq
Hi Simon, I found this formatting error: ...

Hi Simon,
I found this formatting error:
>SRR089306.sra.55 3_31_1136^P_F3
T20320322233120100222232221320320221322203222222223
>SRR089306.sra.56 3_32_245D�^Y_F3...
Forum: Bioinformatics 04-21-2011, 02:02 AM
Replies: 14
Views: 3,085
Posted By chip_seq
I see.Thank you very much.

I see.Thank you very much.
Forum: Bioinformatics 04-20-2011, 06:25 PM
Replies: 14
Views: 3,085
Posted By chip_seq
Thank you very much . Waiting for your answer.

Thank you very much .
Waiting for your answer.
Forum: Bioinformatics 04-20-2011, 02:11 AM
Replies: 14
Views: 3,085
Posted By chip_seq
Hi simon, Thank you. After using abi-dump...

Hi simon,

Thank you.
After using abi-dump i got .csfast file with the following format:
>SRR089316.sra.1 1_18_263_F3
T2203022222121332.03122.0.30.1.03100330.2010101.000
>SRR089316.sra.2...
Forum: Bioinformatics 04-19-2011, 03:23 AM
Replies: 14
Views: 3,085
Posted By chip_seq
Hi Simon, Thank you very much when i tried...

Hi Simon,
Thank you very much
when i tried abi-dump i got .csfasta with following format:

>SRR089316.sra.1 1_18_263_F3
T2203022222121332.03122.0.30.1.03100330.2010101.000
>SRR089316.sra.2...
Forum: Bioinformatics 04-18-2011, 12:11 AM
Replies: 14
Views: 3,085
Posted By chip_seq
SRA to .csfasta

Hi All,
does any one know how to convert .sra files into .csfasata?
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