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Search: Posts Made By: xxqtony
Forum: Bioinformatics 05-17-2018, 07:36 AM
Replies: 0
Views: 323
Posted By xxqtony
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Forum: Ion Torrent 05-17-2018, 07:31 AM
Replies: 0
Views: 1,260
Posted By xxqtony
A

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Forum: Bioinformatics 08-26-2015, 01:55 PM
Replies: 34
Views: 8,735
Posted By xxqtony
I also got errors when I use the provided testing...

I also got errors when I use the provided testing files (at sourceforge dot net contra-cnv testing files folder). I used the command in README file, screen output copied below:
...
Forum: Bioinformatics 08-26-2015, 01:23 PM
Replies: 34
Views: 8,735
Posted By xxqtony
I tried to run CONTRA v2.0.6 and eventually got...

I tried to run CONTRA v2.0.6 and eventually got it run, but it seems to hang over there for half an hour for a pair of 1.3M sample and 0.8M control bam files. Here is the output I got on the screen....
Forum: Bioinformatics 08-24-2015, 09:49 AM
Replies: 13
Views: 5,797
Posted By xxqtony
I also tried with my own data, and finally...

I also tried with my own data, and finally managed to get the program run, however the results are not expected. I have 4x CNV regions/amplicons, but they get 2x prediction. I wonder if there's...
Forum: Bioinformatics 08-24-2015, 09:16 AM
Replies: 13
Views: 5,797
Posted By xxqtony
Hi Valeu, I wonder if you can help me on this....

Hi Valeu,
I wonder if you can help me on this. I tried to run your ONCOCNV v6.1, with the test running, I got the error of Error in file(file, "rt") : cannot open the connection. Then the program...
Forum: General 10-26-2013, 07:35 AM
Replies: 4
Views: 5,478
Posted By xxqtony
If I correctly understand what ONT tries to...

If I correctly understand what ONT tries to convey in its vague description, its sample prep should be super easy, with only 5 eppendorf tubes. They say in the future it would be one-step preparation.
Forum: General 10-24-2013, 03:07 PM
Replies: 3
Views: 5,203
Posted By xxqtony
Shall SeqAnswers open an ONT forum given the...

Shall SeqAnswers open an ONT forum given the news?

NEW YORK (GenomeWeb News) – Oxford Nanopore Technologies plans to launch an early-access program for its MinIon sequencer in late November, the...
Forum: SOLiD 06-18-2009, 10:32 AM
Replies: 19
Views: 4,931
Posted By xxqtony
WhT is great when you need the identification and...

WhT is great when you need the identification and entire sequence of every transcript variant, mutation and polymorphism; wheras SAGE is most practical when you need a deeper and comprehensive...
Forum: SOLiD 06-18-2009, 08:36 AM
Replies: 19
Views: 4,931
Posted By xxqtony
First of all, thank you very much for choosing...

First of all, thank you very much for choosing SOLiD SAGE. I'm invovled in the software development.

In the six files you got, there are actually three pairs of them: pair of 0 color space...
Forum: Bioinformatics 08-20-2008, 10:45 AM
Replies: 236
Views: 548,089
Posted By xxqtony
Any package available for (NGS) SAGE tag mapping...

Any package available for (NGS) SAGE tag mapping to RefSeq/genome etc? Thanks.
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