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Forum: Genomic Resequencing 04-30-2017, 12:03 PM
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Views: 6,623
Posted By jol.espinoz
How to generate VCF from HISAT2 pre-built SNP index?

My ultimate goal is to get a (n= samples, m= SNPs) data matrix. My plan was to use HISAT2 for the mapping, VCF tools for the vcf file, and then parse it to generate the data matrix I can actually...
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