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Search: Posts Made By: DeNovoG
Forum: Bioinformatics 02-10-2012, 08:26 AM
Replies: 2
Views: 3,869
Posted By DeNovoG
Question same question here, any updates since your last post?

I am trying to blast my sanger fastq reads originated from BACs to filter contaminants against the e.coli genomes database. Ive downloaded some of the most representative but it will be more...
Forum: Bioinformatics 07-15-2011, 09:46 AM
Replies: 252
Views: 104,339
Posted By DeNovoG
Hello there, Great tool! my organellar...

Hello there,

Great tool! my organellar assembly improved quite nicely.

Now that I have the scaffolds I wanted to ask here how may upload them to genBank to comply with their requisite of...
Forum: Bioinformatics 04-20-2011, 10:44 AM
Replies: 15
Views: 4,011
Posted By DeNovoG
A Message for the BioInfo Developer Community

Dear developers,

First of all, thanks for all the tools out there that makes our biological research and data analysis possible.

Today, I just wanted to lay a constructive critique about...
Forum: Bioinformatics 05-25-2010, 03:48 AM
Replies: 12
Views: 3,679
Posted By DeNovoG
Hello, well you were right about the link,...

Hello,

well you were right about the link, I've sent an email to the author to see if he can fix it (https://sourceforge.net/users/crinkly_foil/)

whatever the tool I believe that to build a...
Forum: Bioinformatics 05-20-2010, 10:09 AM
Replies: 12
Views: 3,679
Posted By DeNovoG
I am also trying to deal with that. Correct me if...

I am also trying to deal with that. Correct me if I am wrong, you want to use a multifasta file (assembly cell contigslist.fasta) and generate a .ace file?

I believe we require the mapping...
Forum: Bioinformatics 05-20-2010, 12:03 AM
Replies: 12
Views: 3,679
Posted By DeNovoG
Export your contig table as .ace. Convert it...

Export your contig table as .ace.
Convert it with amos ace2contigs.
Generate your own mates files with a script.
run goBambus.
Forum: Bioinformatics 05-18-2010, 01:42 PM
Replies: 278
Views: 114,550
Posted By DeNovoG
Quick questions: does Ray supports illumina 1.6+...

Quick questions: does Ray supports illumina 1.6+ fastq sequences (the ones with trailing B's : http://seqanswers.com/forums/showthread.php?t=4721&highlight=fastq+wiki) does Ray has the capability for...
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