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Search: Posts Made By: karimhasanpur@yahoo.com
Forum: Bioinformatics 06-26-2015, 01:35 AM
Replies: 9
Views: 2,826
cufflinks warnings: could not find fasta records

Dar friends,

I am getting the same warnings. I have downloaded Galgal4 reference files from iGenome. When running cufflinks, I am getting "warning: couldn't find fasta record for LGE64 ...". I...
Forum: RNA Sequencing 06-07-2015, 12:08 AM
Replies: 2
Views: 1,936
cs.scattermatrix error

Dear Jozeph,

I am now encountered with the same error as you were. Did you find a way to solve your problem? I would be so grateful if you share that with me.

Thanks in advance'
Karim
Forum: Bioinformatics 06-03-2015, 09:25 AM
Replies: 5
Views: 2,497
my cuffdiff outputs

Dear Genomax,
Many thanks for your advice. I have downloaded reference genome and transcriptome from Ensembl: ftp://ftp.ensembl.org/pub/release-79/fasta/gallus_gallus/dna/
And successfully used...
Forum: Bioinformatics 06-02-2015, 11:11 PM
Replies: 5
Views: 2,497
I cannot download chicken files from iGenome

Dear all,
I have difficulties in downloading chicken files from iGenome site. I tried for a week but unfortunately i couldn't download them. Does anyone have these files to share with me?
Thanks...
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