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Forum: Bioinformatics 01-28-2013, 12:35 PM
Replies: 0
Views: 816
Posted By tyxer
Question about understanding TophatFusion output

Hi, there:

I got my output from TophatFusion and try to get an idea about how reliable a fusion event is.

From the explanation in the output, there are 3 numbers may contribute to this:
8....
Forum: Bioinformatics 07-11-2012, 04:58 PM
Replies: 9
Views: 4,538
Posted By tyxer
Hi, Emilie: It is good to know this bug....

Hi, Emilie:

It is good to know this bug. However, it is not the reason of my problem.
For my problem, the reason is stupid that I did not name the folders correctly.

Bests

Yuxiang
Forum: Bioinformatics 06-15-2012, 01:07 PM
Replies: 6
Views: 8,097
Posted By tyxer
Hi, genericforms: Thank you so much. It...

Hi, genericforms:

Thank you so much.

It is really helpful.

Bests

Yuxiang
Forum: Bioinformatics 06-15-2012, 12:37 PM
Replies: 6
Views: 8,097
Posted By tyxer
Hi, genericforms: I did not know bamtools...

Hi, genericforms:

I did not know bamtools has interface. Do you mean the API?
I only tried the command line functions.

Thank you

Yuxiang
Forum: Bioinformatics 06-15-2012, 11:16 AM
Replies: 6
Views: 8,097
Posted By tyxer
Hi, Adamdeluca OK, thank you. I will try...

Hi, Adamdeluca

OK, thank you. I will try them.

Bests

Yuxiang
Forum: Bioinformatics 06-11-2012, 12:24 PM
Replies: 6
Views: 8,097
Posted By tyxer
'read' bam file directly

Hi, there:

I am working on quality statistics on aligned reads of sequencing data.
As all know, bam is the binary format that people can not really 'read' it by lines.
As a result, I have to...
Forum: Bioinformatics 05-24-2012, 02:22 PM
Replies: 9
Views: 4,538
Posted By tyxer
I got the same error as SCPHSD too. Anyone has...

I got the same error as SCPHSD too.
Anyone has any ideas about this?

Thank you so much
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