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Forum: Bioinformatics 01-26-2012, 06:04 PM
Replies: 7
Views: 11,022
Posted By jflowers
One final thought, check the metrics file to...

One final thought, check the metrics file to determine how many of your reads are being detected as optical and PCR duplicates. If your regex is working, there should be > 0 optical duplicates
Forum: Bioinformatics 01-26-2012, 05:36 PM
Replies: 7
Views: 11,022
Posted By jflowers
Your regular expression won't match your read...

Your regular expression won't match your read names as you have them. The problem is that you need to include (1) capturing parentheses and (2) use + (to indicate one or more character matches).
...
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