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Search: Posts Made By: johnwhitaker
Forum: Bioinformatics 04-29-2010, 09:29 AM
Replies: 9
Views: 3,794
Posted By johnwhitaker
I think I just specified that the job should be...

I think I just specified that the job should be allowed more memory when submitting to our cluster.
Forum: Literature Watch 12-08-2009, 02:33 AM
Replies: 2
Views: 2,304
Posted By johnwhitaker
Has anyone tried this out?

Has anyone tried this out?
Forum: Bioinformatics 10-12-2009, 10:57 AM
Replies: 9
Views: 3,794
Posted By johnwhitaker
I got around the problem by increasing the memory...

I got around the problem by increasing the memory to 16 Gigs.
Forum: Bioinformatics 10-12-2009, 03:01 AM
Replies: 9
Views: 3,794
Posted By johnwhitaker
I also got this error. Did you ever work out what...

I also got this error. Did you ever work out what was going wrong?
Forum: 454 Pyrosequencing 01-19-2009, 09:12 AM
Replies: 29
Views: 14,968
Posted By johnwhitaker
Thanks for your detailed reply. I had been...

Thanks for your detailed reply.

I had been thinking about clustering the contigs today. I have used blastclust before also I was having a look at CLOBB...
Forum: 454 Pyrosequencing 01-15-2009, 08:06 AM
Replies: 29
Views: 14,968
Posted By johnwhitaker
Question 454 assemly

Hello,

I have been given two sets 454 data which have already been assembled into contigs using the newbeler assembler. The data is transcript sequence from two different flower types, from a...
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