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Forum: Bioinformatics 12-02-2010, 01:46 AM
Replies: 132
Views: 63,329
Posted By hash
Error rate...

Please correct me if I am wrong but I have played around with cutadapt and this is what I understood from the error rate. It can be calculated by multiplying the error rate by the length of the...
Forum: Bioinformatics 12-02-2010, 01:38 AM
Replies: 132
Views: 63,329
Posted By hash
Great tool...

Hi,

This is a great tool by the way. I was hoping for someone to have already implemented exactly this tool as I was scratching my head as to do it myself. Thanks a lot.

May I make a couple of...
Forum: Bioinformatics 07-07-2010, 01:22 AM
Replies: 10
Views: 16,871
Posted By hash
Mismatch threshold for both reads in a paired-end run

Hi,

One of my colleagues has found that when he aligns 80bp paired-end reads using bwa that the mismatch threshold only applies to any one of the two sequences and the other can have as many...
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