SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 6 of 6
Search took 0.00 seconds.
Search: Posts Made By: TRA
Forum: Bioinformatics 11-11-2015, 07:44 AM
Replies: 6
Views: 2,960
Posted By TRA
Hi all, I am using edgeR flow to get gene...

Hi all,
I am using edgeR flow to get gene lists of multifactorial experiment. I have 6 conditions with 3 samples per each. The problem is some of the gene lists I got end at FDR much less than what...
Forum: RNA Sequencing 11-11-2015, 07:39 AM
Replies: 2
Views: 1,859
Posted By TRA
Hi all, I am using edgeR flow to get gene...

Hi all,
I am using edgeR flow to get gene lists of multifactorial experiment. I have 6 conditions with 3 samples per each. The problem is some of the gene lists I got end at FDR much less than what...
Forum: RNA Sequencing 11-09-2015, 08:35 AM
Replies: 1
Views: 975
Posted By TRA
Cuffdiff - inf values

I ran Bowtie to align my RNA-seq of 18 samples, 3 per group, single end read sequencing. Some of LogFc values that I got from CuffDiff assigned to inf or -inf. What does that mean? Can I replace the...
Forum: Bioinformatics 10-28-2015, 06:46 AM
Replies: 6
Views: 2,960
Posted By TRA
Thank you appreciate it

Thank you appreciate it
Forum: Bioinformatics 10-27-2015, 08:57 AM
Replies: 6
Views: 2,960
Posted By TRA
Hi all, I mapped my RNA-seq reads using edgeR...

Hi all,
I mapped my RNA-seq reads using edgeR and got around 90% of mapping, but when I entered the feature count commands I got only 70% successfully assigned reads. Does any one have an idea? ...
Forum: Bioinformatics 07-23-2015, 07:07 AM
Replies: 12
Views: 6,639
Posted By TRA
I am using...

I am using http://bioinfogp.cnb.csic.es/tools/venny/ to sort my DEG lists that resulted from RNA-Seq analysis, but some of the genes get ignored by the program.

Is any one know the reason for...
Showing results 1 to 6 of 6

 


All times are GMT -8. The time now is 08:18 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO