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Forum: Bioinformatics 09-12-2013, 08:06 PM
Replies: 0
Views: 1,660
Posted By washy
Error of csCluster in CummeRbund

Dear All

We had following error when we run CsCluster for human trasncriptome data.

Using tracking_id, sample_name as id variables Error in pam(n,...
Forum: Bioinformatics 09-12-2013, 06:34 PM
Replies: 6
Views: 2,980
Posted By washy
We had same error even if we use latest version...

We had same error even if we use latest version of Tophat2.
The version of the software we used are as follows.

- Tophat: ver. 2.0.9
- bowtie2: ver. 2.1.0
- cuffdiff: ver. 2.1.1
Forum: RNA Sequencing 02-19-2013, 09:57 PM
Replies: 2
Views: 3,054
Posted By washy
TopHat "-M" option and Unmapped.bam file

We have questions regarding TopHat "-M/--prefilter-multihits" option and Unmapped.bam file.

First, adapter sequences and low quality bases were removed from FASTQ file, all of reads should be...
Forum: Service Providers 09-08-2009, 02:33 AM
Replies: 162
Views: 155,001
Posted By washy
Dear all, Riken Genesis (Japan) offers both...

Dear all,
Riken Genesis (Japan) offers both Whole Genome Genotyping and Next Gen Sequencing services.
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