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Forum: Bioinformatics 12-05-2012, 10:12 AM
Replies: 0
Views: 1,280
Posted By katzman
DEXSeq cluster heat map like DESeq is desirable

We really like the cluster heat map that we get when using DESeq.

Is it possible to get a similar plot from DEXSeq?

This is the code to do it in DESeq:

# need a "full blind" version for...
Forum: Bioinformatics 10-09-2012, 10:49 AM
Replies: 14
Views: 7,207
Posted By katzman
I am a longtime DESeq user (and a big fan). ...

I am a longtime DESeq user (and a big fan).

On my first attempt with DEXSeq, I got the same message as fpadilla while calling estimateDispersions():

Error in match.arg(start.method, c("log(y)",...
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