SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 6 of 6
Search took 0.00 seconds.
Search: Posts Made By: Naujv
Forum: Bioinformatics 07-24-2010, 12:20 AM
Replies: 10
Views: 1,753
Posted By Naujv
Thank you! Going through 2008 MAQ paper now.

Thank you! Going through 2008 MAQ paper now.
Forum: Bioinformatics 07-23-2010, 05:14 PM
Replies: 10
Views: 1,753
Posted By Naujv
nils thanks for the help! i'm new (as in today...

nils thanks for the help! i'm new (as in today new) to bwa. it may not be an error/bug, though i tried to look where the alignment is, i couldn't find it. the sequence looks like one big ugly repeat,...
Forum: Bioinformatics 07-23-2010, 01:59 PM
Replies: 10
Views: 1,753
Posted By Naujv
krobison, thanks! I appreciate your input. ...

krobison, thanks! I appreciate your input.

Took your advice and tried bwasw, but sort of ran into a problem with my alignments. My CIGAR string has "S" in them. Found another post where I guess...
Forum: Bioinformatics 07-23-2010, 09:09 AM
Replies: 10
Views: 1,753
Posted By Naujv
Hi litati, I just tried using maq on my 454...

Hi litati,

I just tried using maq on my 454 data. What I'm seeing from the alignment (maq mapview all.map > $someoutputfile) are my sequences are being cut off at 34 nts.
Forum: Bioinformatics 07-22-2010, 05:34 PM
Replies: 10
Views: 1,753
Posted By Naujv
Hi litali, I'm not sure if it's the right...

Hi litali,

I'm not sure if it's the right thing to do, the MAQ website FAQ section actually says: "Maq maps short reads to the reference and calls the genotypes from the alignment. It is...
Forum: Introductions 07-22-2010, 05:03 PM
Replies: 373
Views: 92,511
Posted By Naujv
Hello- I'm mostly doing bioinformatics, some...

Hello-

I'm mostly doing bioinformatics, some lab work with respect to next gen sequencing projects. I'm just very glad you all exist! You've definitely been a wealth of information.
Showing results 1 to 6 of 6

 


All times are GMT -8. The time now is 09:54 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO