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Search: Posts Made By: krueml
Forum: Bioinformatics 09-28-2012, 05:36 AM
Replies: 2
Views: 2,123
Posted By krueml
Yes sorry I posted the wrong link. This what I...

Yes sorry I posted the wrong link. This what I have posted was my mpileup output.
Well sorry that I wasn't clear. I was just asking how I can set the minimum consensus quality. After the whole...
Forum: Bioinformatics 09-27-2012, 06:15 AM
Replies: 2
Views: 2,123
Posted By krueml
variant calling with SAMtools

Hi, I am trying to repeat a papers steps to detect somatic variants. My earlier steps were using bwa, picard sortsam and addedreadgroup, and gatk indelrealigner. now I'm stucking at the variant...
Forum: Bioinformatics 08-27-2012, 07:29 AM
Replies: 6
Views: 1,929
Posted By krueml
Hello, I didn't want to open a new thread,...

Hello,

I didn't want to open a new thread, but I need help in my situation. I have whole genome data of a human sequenced by illumina and I have a problem with the library settings in_lib.csv. I...
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