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Forum: Bioinformatics

06-22-2010, 01:36 AM

Replies: 11

Tophat Run time

Views: 12,398

Posted By bassu

Thanks all, @Rao: yes i am using RNA-seq data. ...

Thanks all,
@Rao: yes i am using RNA-seq data.

@mf_bill: thanks for your valuable comment, I was wondering whether my system configuration was right ? Even though BWT, tophat will produce huge...

Forum: Bioinformatics

06-21-2010, 06:29 AM

Replies: 11

Tophat Run time

Views: 12,398

Posted By bassu

Tophat Run time

Dear all,

I am currently running tophat to align human genome reference(hg19 bowtie index) to illumina pair-end data of size 17Gb each(17*2). Its almost 24 houurs and its still running. I...

Forum: General

06-19-2010, 04:48 AM

Replies: 2

Difference between mate pair and pair end

Views: 9,124

Posted By bassu

Difference between mate pair and pair end

Hi All,

i am confused between two terminology Mate paired and Pair end. Please help me out on this.

Thanks

Forum: General

06-19-2010, 03:07 AM

Replies: 4

Ngs data analysis

Views: 5,426

Posted By bassu

Dear mgogol & flobpf, Thanks for your kind...

Dear mgogol & flobpf,

Thanks for your kind informations, i will work with your provided information and let you informed about my progress time to time.

Once again thank you guys!!

Forum: General

06-18-2010, 01:53 AM

Replies: 4

Ngs data analysis

Views: 5,426

Posted By bassu

Ngs data analysis

Dear All,

As a part of my curriculum, i am currently planning to do a pipeline like sort on NGS data. Through various reading and other sorts i found that there are some leading tools like...

Showing results 1 to 5 of 5

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