Forum: Bioinformatics
12-01-2011, 06:56 PM
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Replies: 4
Views: 2,880
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Forum: Bioinformatics
11-30-2011, 05:09 PM
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Replies: 3
Views: 2,512
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Forum: Bioinformatics
11-30-2011, 04:36 PM
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Replies: 4
Views: 2,880
23andme raw Illumina intensity reads
Has anyone been able to get the raw Illumina reads from 23andme?
I have asked repeatedly about this and just get a runaround answer. Are we not entitled to the raw data to do our own analysis,...
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Forum: General
11-30-2011, 04:30 PM
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Replies: 11
Views: 3,599
I have 23andme and Nimblegen exome now, and...
I have 23andme and Nimblegen exome now, and Complete Genomics (or Amazon to be technical) is supposed to deliver WGS any minute. I am a PGP volunteer so it will all be public, but PGP still hasn't...
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Forum: Bioinformatics
11-09-2011, 11:20 AM
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Replies: 4
Views: 2,586
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Forum: Bioinformatics
10-27-2011, 11:26 AM
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Replies: 3
Views: 2,512
installing birdsuite
Has anyone been able to install the Broad's birdsuite on Ubuntu or CentOS?
I tried on Ubuntu 10.04 LTS 64-bit. First, the broadgap.* files would not install at step 5, and Broad support sent me...
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Forum: Illumina/Solexa
09-28-2011, 12:25 PM
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Replies: 4
Views: 12,243
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Forum: Illumina/Solexa
09-28-2011, 09:25 AM
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Replies: 4
Views: 12,243
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Forum: Illumina/Solexa
09-28-2011, 08:25 AM
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Replies: 4
Views: 12,243
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Forum: Bioinformatics
07-21-2011, 07:48 AM
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Replies: 4
Views: 2,586
assembling Nimblegen exome reads
I just got Nimblegen v2 exome data. I would like to assemble the reads, exon by exon. Is there a program that will do this? DNAnexus maps the reads to the Golden Path and provides variant calls, but...
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Forum: Bioinformatics
06-30-2011, 04:05 PM
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Replies: 0
Views: 1,797
dbSNP build 133 & mysql
Does anyone know of a mysql table version of dbSNP build 133? I assume eventually it will appear at UCSC, but it may take a while.
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Forum: Introductions
06-27-2011, 10:10 AM
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Replies: 4
Views: 3,167
SNPedia
Thanks for the tip. I use Promethease for my 23andme data, but I was not aware that they have incorporated CGI data analysis as well.
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Forum: Bioinformatics
06-18-2011, 09:44 AM
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Replies: 0
Views: 1,622
human genome build identifier tool
Before I start working on this, does anyone have a tool that identifies which build a set of gene coordinates belongs to from among the human genome builds? I have run into several papers where the...
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Forum: Introductions
06-18-2011, 09:38 AM
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Replies: 4
Views: 3,167
Complete Genomics user
I teach pharmacogenomics at Southern Illinois University and I am a subject of the Personal Genomes Project. I got a seed grant from my university an my genome is being sequenced by Complete...
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