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Forum: Bioinformatics

02-27-2013, 07:51 AM

Replies: 5

Tophat2 can't find Bowtie2

Views: 2,379

Posted By rnavon

Updating Tophat from 2.0.7 to 2.0.8 solved the...

Updating Tophat from 2.0.7 to 2.0.8 solved the problem.

Forum: Bioinformatics

02-26-2013, 12:36 PM

Replies: 13

GO analysis followup

Views: 2,999

Posted By rnavon

If a gene is not expressed in both groups....

If a gene is not expressed in both groups. Doesn't it mean it is measured to be not differentially expressed between the two groups and should therefore be in the background set?

Forum: Bioinformatics

02-26-2013, 12:27 PM

Replies: 5

Tophat2 can't find Bowtie2

Views: 2,379

Posted By rnavon

Thanks! It wasn't on the site a couple of hours...

Thanks!
It wasn't on the site a couple of hours ago. I'll install the new tophat version and see if it helps.

Forum: Bioinformatics

02-26-2013, 12:15 PM

Replies: 5

Tophat2 can't find Bowtie2

Views: 2,379

Posted By rnavon

I'll try that but it's not a permanent solution...

I'll try that but it's not a permanent solution as I want to be able to keep the previous version for other users.
Can't I have both bowtie and bowtie2 installed side by side?

Forum: Bioinformatics

02-26-2013, 09:46 AM

Replies: 13

GO analysis followup

Views: 2,999

Posted By rnavon

Why calculate the enrichment yourself instead of...

Why calculate the enrichment yourself instead of using an external tool?
GOrilla http://cbl-gorilla.cs.technion.ac.il/ for example can calculate the enriched GO terms for you.
It has 2 modes:
1....

Forum: Bioinformatics

02-26-2013, 09:38 AM

Replies: 5

Tophat2 can't find Bowtie2

Views: 2,379

Posted By rnavon

Tophat2 can't find Bowtie2

Hi Everyone,

After my previous installed tophat/bowtie versions worked without a problem, I wanted to update to the newest versions and also installed tophat2 and bowtie2. Both programs have links...

Showing results 1 to 6 of 6

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