Forum: Bioinformatics
03-03-2015, 02:23 PM
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Replies: 2
Views: 2,449
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Forum: Bioinformatics
06-05-2014, 12:50 PM
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Replies: 3
Views: 2,754
i think you should change the query to aligner...
i think you should change the query to aligner for multiply mapped reads!
most aligners you mention have different options to select multiply mapped reads, so it might end up being multiple options...
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Forum: Bioinformatics
02-07-2013, 10:42 AM
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Replies: 15
Views: 10,888
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Forum: Academic/Non-Profit Jobs
07-23-2012, 01:50 PM
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Replies: 1
Views: 2,168
We have more openings for bioinformatics,...
We have more openings for bioinformatics, especially for NGS analysis
http://www.mayo-clinic-jobs.com/job/Rochester-Informatics-Specialist-Job-MN-55901/1688902/
And the updated link for the more...
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Forum: General
07-05-2012, 07:06 AM
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Replies: 3
Views: 2,200
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Forum: General
07-05-2012, 07:03 AM
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Replies: 3
Views: 2,200
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Forum: Events / Conferences
06-12-2012, 01:55 PM
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Replies: 0
Views: 1,584
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Forum: Bioinformatics
05-31-2012, 12:33 PM
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Replies: 2
Views: 1,558
If it is so homologus, you are bound to see...
If it is so homologus, you are bound to see mis-alignment. It might be a good idea to check out mappability features for your genes of interest. Perhaps a longer read application would be more suited...
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Forum: Bioinformatics
05-31-2012, 12:25 PM
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Replies: 3
Views: 1,606
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Forum: Bioinformatics
05-31-2012, 12:23 PM
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Replies: 3
Views: 1,606
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Forum: Bioinformatics
05-31-2012, 12:04 PM
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Replies: 13
Views: 5,966
Is it possible for you to share the final...
Is it possible for you to share the final solution, and where the ancestral allele sequence can be obtained from?
I know Petr provided most of the snippets, but if you can summarize the working...
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Forum: General
04-16-2012, 02:24 PM
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Replies: 1
Views: 6,367
I just posted this on biostar
...
I just posted this on biostar
http://www.biostars.org/post/show/17335/where-to-find-a-good-estimate-of-the-background-mutation-rate-in-rattus-norvegicus/#42809
This paper...
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Forum: Personalized Genomics
04-10-2012, 08:08 PM
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Replies: 8
Views: 9,801
SmartPhone APP for personalized genome
Just noticed that EdgeBio released their iTunes app today with twitter, facebook and social features .. any others already out there?
I remember Illumina's Bentley talking about the iPhone app,...
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Forum: General
04-10-2012, 07:59 PM
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Replies: 24
Views: 134,144
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Forum: Bioinformatics
04-10-2012, 07:48 PM
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Replies: 17
Views: 9,828
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Forum: Bioinformatics
04-10-2012, 07:46 PM
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Replies: 4
Views: 1,474
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Forum: Bioinformatics
04-10-2012, 07:44 PM
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Replies: 9
Views: 9,639
thats interesting. Why would you need that...
thats interesting. Why would you need that correlation? why not just use a statistical model, like the ones in useq or macs, and when you input the replicates as case and control, obtain not many...
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Forum: Bioinformatics
04-10-2012, 07:42 PM
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Replies: 9
Views: 6,507
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Forum: Bioinformatics
04-10-2012, 07:38 PM
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Replies: 9
Views: 2,362
or you can try splitting the bam file by...
or you can try splitting the bam file by chromosome and then calling SNP on them separately.. you could also try starting from the fastq or qseq files, run alignment using something like bwa and then...
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Forum: Bioinformatics
04-10-2012, 07:29 PM
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Replies: 3
Views: 3,748
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Forum: Academic/Non-Profit Jobs
03-09-2012, 02:25 PM
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Replies: 1
Views: 2,168
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Forum: Academic/Non-Profit Jobs
12-16-2011, 02:27 PM
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Replies: 0
Views: 2,070
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Forum: Academic/Non-Profit Jobs
11-17-2011, 02:32 PM
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Replies: 0
Views: 1,933
Informatics Specialists @ Mayo Clinic
Check out the original job posting here:
http://www.mayo-clinic-jobs.com/job/Rochester-Informatics-Specialist-Job-MN-55901/1530977/
Next-gen sequencing, systems biology or data integration...
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Forum: Site Feedback/Suggestions
11-10-2011, 02:48 PM
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Replies: 430
Views: 83,608
got really tied up for the past couple months,...
got really tied up for the past couple months, but this is very interesting, and can look to contribute.
I will start with scrolling through the thread, but feel free to PM me with any specifics..
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Forum: Events / Conferences
09-13-2011, 12:12 PM
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Replies: 1
Views: 2,548
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