SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 5 of 5
Search took 0.00 seconds.
Search: Posts Made By: arnkas
Forum: Genomic Resequencing 07-07-2010, 07:26 AM
Replies: 5
Views: 2,882
Posted By arnkas
Well, the reason I split the genome was that I...

Well, the reason I split the genome was that I ran into a segmentation fault running "bwa aln -c" against the entire mouse genome. I was able to isolate this to a single read. I tried it against...
Forum: Genomic Resequencing 07-06-2010, 05:00 PM
Replies: 5
Views: 2,882
Posted By arnkas
merging files which map reads to separate parts of the genome

Thank you for you response. I have also used samtools merge.

As I understand it, bwa eliminates reads that map to more than one place in the genome. Since my 2 files involves mapping reads to...
Forum: Genomic Resequencing 06-24-2010, 12:08 PM
Replies: 5
Views: 2,882
Posted By arnkas
merging bwa alignments

Hello,
I am using bwa to map solid data to the mouse genome, but get a segmentation fault while running bwa aln. If I separate the genome into 2 halves, it works all right, so I assume that the...
Forum: Bioinformatics 11-08-2009, 03:41 PM
Replies: 2
Views: 2,007
Posted By arnkas
Perfect. Thanks.

Perfect. Thanks.
Forum: Bioinformatics 11-07-2009, 02:44 PM
Replies: 2
Views: 2,007
Posted By arnkas
Quality values for aligned reads in .sam file

Hi,
I am mapping ABI solid reads using bwa, and then converting to a sam file and ultimately to a .pilup file using samtools. I am trying to understand the quality values in the sam file. For the...
Showing results 1 to 5 of 5

 


All times are GMT -8. The time now is 08:50 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO