SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 7 of 7
Search took 0.00 seconds.
Search: Posts Made By: NinaG
Forum: RNA Sequencing 08-11-2017, 06:49 AM
Replies: 4
Views: 2,161
Posted By NinaG
colindaven, thank you! It seems that my doubts...

colindaven, thank you! It seems that my doubts had reasons.
Forum: RNA Sequencing 08-10-2017, 04:49 AM
Replies: 4
Views: 2,161
Posted By NinaG
Brian Bushnell, we have already found those...

Brian Bushnell, we have already found those exonic SNPs and annotated them, but, as you say, the question is the interpretation.




But even using simulation to confirm the accuracy, could the...
Forum: RNA Sequencing 08-09-2017, 07:07 AM
Replies: 4
Views: 2,161
Posted By NinaG
SNP calling from RNAseq data

Hello NGS fellows,

I am a newbie here and would highly appreciate your advice about one particular experimental design.

We have data from RNAseq experiment which was originally designed to...
Forum: Bioinformatics 03-03-2015, 11:51 PM
Replies: 9
Views: 2,277
Posted By NinaG
Brian Bushnell, thank you for the explanation....

Brian Bushnell, thank you for the explanation. Indeed, coverage is far from flat.

SNPsaurus, thank you for the suggestion! We generated low-threshold lists for all samples and then applied...
Forum: Bioinformatics 03-01-2015, 01:56 AM
Replies: 9
Views: 2,277
Posted By NinaG
Brian Bushnell, could you, please, give a cue...

Brian Bushnell, could you, please, give a cue what is kmer frequency histogram? I am new in this field and dont't know what is this. We made a search of SNPs against reference assembly of fruit fly...
Forum: Bioinformatics 02-28-2015, 09:43 PM
Replies: 9
Views: 2,277
Posted By NinaG
Hi sarvidsson, thank you for the reply! We...

Hi sarvidsson, thank you for the reply!

We used paired-end RNAseq on mRNA (there should not be problems related to splicing junctions, isn't it?), with 90 mln reads per a sample. For SNP calling...
Forum: Bioinformatics 02-27-2015, 06:30 AM
Replies: 9
Views: 2,277
Posted By NinaG
Tool to estimate genetic heterogeneity using SNP

Hello everyone,

I have a question related to using SNPs as markers of population heterogeneity.

We have four fly strains who are supposed to have the same genetic background. To check if this...
Showing results 1 to 7 of 7

 


All times are GMT -8. The time now is 09:05 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO