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Forum: Bioinformatics 10-30-2015, 09:46 AM
Replies: 2
Views: 1,084
Posted By fox454
My species does not have a reference genome....

My species does not have a reference genome. There is a draft genome of a closely related species that I am using as a starting point. I used GATK alternate reference maker to incorporate the...
Forum: Bioinformatics 10-29-2015, 09:14 AM
Replies: 2
Views: 1,084
Posted By fox454
SNP flanking regions with "pseduo"-reference & viewing all alignments around SNPs

Hi everyone,

Sorry for the long post but I could really use your help! I'm trying to verify flanking regions around SNPs and worried about how my "pseudo"-reference may affect my results...
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