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Forum: Bioinformatics 02-01-2012, 03:53 PM
Replies: 2
Views: 3,546
Posted By audqf
In case ulz_peter and others are interested, it...

In case ulz_peter and others are interested, it turns out that GATK UG does not make indel calls for 454 data.

I also posted the same question here:...
Forum: Bioinformatics 01-30-2012, 02:47 PM
Replies: 2
Views: 3,546
Posted By audqf
How to deal with no calls from GATK Unifiedgenotyper for indels

I am working with 454 single-end long-read data for a region on chr6, using hg19 and dbSNP build 135 as references. GATK Unifiedgenotyper with the option -glm INDEL returns no calls on...
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