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Forum: Bioinformatics 10-04-2011, 02:13 AM
Replies: 17
Views: 4,797
Posted By janec
Thanks, Kopi. I'm using it on a remote...

Thanks, Kopi.

I'm using it on a remote server so am waiting for one of our sysadmins to install the latest versions of R and DESeq - much googling revealed that using the developer version of R...
Forum: Bioinformatics 10-03-2011, 04:45 AM
Replies: 17
Views: 4,797
Posted By janec
DESeq problems

I'm running DESeq for the first time and am having a few problems. I'm working through the documentation dated August 11, 2011.

I had no problems setting up a CountDataSet object with my counts...
Forum: Bioinformatics 07-07-2011, 01:42 AM
Replies: 0
Views: 1,538
Posted By janec
Reads map in Tophat, but Cufflinks doesn't find transcripts

I'm trying to analyse some RNA-seq data for the first time. We are looking for novel non-coding transcripts that are expected to (mostly) be unspliced of low abundance.

With that in mind I've...
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