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Search: Posts Made By: Timofey Skvortsov
Forum: Bioinformatics 04-25-2017, 12:48 PM
Replies: 2
Views: 969
Posted By Timofey Skvortsov
Thanks, Brian. I tried using Minimus2 before,...

Thanks, Brian. I tried using Minimus2 before, still have a feeling that CAP3 produces better results. As I am pretty sure that my contigs don't have any overlaps, might give Dedupe a go.
Forum: Bioinformatics 04-25-2017, 01:03 AM
Replies: 2
Views: 969
Posted By Timofey Skvortsov
CAP3 - strange behaviour, never finishes running (2xXeon 2620v4/Ubuntu 16.04.2 LTS)

I am running CAP3 under Ubuntu 16.04.2 LTS (2xXeon 2620v4) to assemble a very small data set (31 contigs in 7k-700k bp range). I am doing that to check whether or not the contigs can be merged by...
Forum: Bioinformatics 04-05-2017, 11:49 AM
Replies: 11
Views: 2,906
Posted By Timofey Skvortsov
We just got ourselves a new Supermicro-based...

We just got ourselves a new Supermicro-based workstation:

2xE5-2620v4
128GB DDR4 RAM
1TB SSD+2x4TB HDD
GeForce GT 730

Less than 4,000, including a 24" IPS monitor.

For 10K USD...
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